Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs79415661 chr8:24927361 G/A 2.7E-6 497 31.37 36.22 35.22 KM Plot
THCA rs79423518 chr11:64105454 G/A 9.17E-9 492 31.73 30.15 33.97 KM Plot
THCA rs79443786 chr14:23561646 T/C 5.44E-15 498 31.7 31.93 12.97 KM Plot
THCA rs79457852 chr21:47747579 G/A 8.67E-6 503 31.6 32.27 11.87 KM Plot
THCA rs7945950 chr11:107319638 T/C 1.61E-8 501 31.6 31.43 23.38 KM Plot
THCA rs79520860 chr1:152895586 G/A 0.000142 501 31.42 34.43 37.7 KM Plot
THCA rs79548559 chr7:44005845 C/T 3.65E-9 495 31.15 33.08 33.7 KM Plot
THCA rs79555170 chr19:9823489 T/G 4.26E-6 503 31.42 33.53 32.9 KM Plot
THCA rs79595278 chr11:107324113 T/C 3.66E-11 502 31.7 29.73 33.7 KM Plot
THCA rs79721426 chr14:23559950 A/G 5.44E-15 498 31.7 31.93 12.97 KM Plot
THCA rs79792035 chr8:144565798 G/C 6.19E-7 492 31.7 30.92 21.93 KM Plot
THCA rs7979945 chr12:104615252 C/T 1.44E-5 497 31.83 28.85 23.83 KM Plot
THCA rs7989286 chr13:50131584 T/G 1.84E-5 499 34.52 29.87 31.73 KM Plot
THCA rs79899465 chr16:79271389 C/A 0 498 31.47 31.97 5.8 KM Plot
THCA rs7992396 chr13:50122503 T/C 1.77E-5 500 34.52 30.37 31.77 KM Plot